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Laboratoire de Biodiversité et Biotechnologies Microbiennes
LBBM - USR3579

publications and patents 2010

personnel currently in the LBBM

Brevet international n. 1061081 Novel bacterium and extracts of said bacterium and the use of same in dermatology 22/12/2010, BOURRAIN M, LEBARON P, N'GUYEN T, CASTEX-RIZZI N.


Alain, K., B. Tindall, P. Catala, L. Intertaglia, and P. Lebaron. (2010). Ekhidna lutea gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from the South East Pacific Ocean. Int J Syst Evol Microbiol DOI 10.1099/ijs.0.018804-0

Baudart, J., and P. Lebaron. (2010). Rapid detection of Escherichia coli in waters using fluorescent in situ hybridization, direct viable counting and solid phase cytometry. J Appl Microbiol 109:1253-1264

Bodaker, I., I. Sharon, M. T. Suzuki, R. Feingersch, M. Shmoish, E. Andreishcheva, M. L. Sogin, M. Rosenberg, M. E. Maguire, S. Belkin, A. Oren, and O. Beja. (2010). Comparative community genomics in the Dead Sea, an increasingly extreme environment, ISME J. 4:399-407.

Feingersch, R., M. T. Suzuki, M. Shmoish, I. Sharon, G. Sabehi, F. Partensky, and O. Beja. (2010). Microbial community genomics in eastern Mediterranean Sea surface waters. ISME J 4:78-87.

Guillebault D, Laghdass M, Catala P, Obernosterer I, Lebaron P (2010) Improved method for bacterial cell capture after flow cytometry cell sorting. Appl Environ Microbiol 76:7352-7355

Laghdass, M., N. J. West, N. Batailler, J. Caparros, P. Catala, F. Lantoine, L. Oriol, P. Lebaron, and I. Obernosterer. (2010). Impact of lower salinity waters on bacterial heterotrophic production and community structure in the offshore NW Mediterranean Sea. Environ Microbiol Rep 2:761-769

Matallana-Surget, S., T. Douki, J. A. Meador, R. Cavicchioli, and F. Joux. (2010). Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation. J Photoch Photobio B 100:51-56.

Matallana-Surget, S., B. Leroy, and R. Wattiez. (2010). Shotgun proteomics: concept, key points and data mining. Expert Rev Proteomic 7:5-7.

Obernosterer, I., R. Lami, M. Larcher, N. Batailler, P. Catala, and P. Lebaron. (2010) Linkage between bacterial carbon processing and the structure of the active bacterial community at a coastal site in the NW Mediterranean Sea. Microb. Ecol.59:428-435.

Parthuisot, N., N. J. West, P. Lebaron, and J. Baudart. (2010). High Diversity and Abundance of Legionella spp. in a Pristine River and Impact of Seasonal and Anthropogenic Effects. Appl Environ Microbiol 76:8201-8210.

Urios, L., V. Michotey, L. Intertaglia, F. Lesongeur, and P. Lebaron. (2010). Thalassobaculum salexigens sp. nov., a new member of the family Rhodospirillaceae from the NW Mediterranean Sea, and emended description of the genus Thalassobaculum. Int J Syst Evol Microbiol 60:209-13.

Zemb, O., N. West, M. Bourrain, J. J. Godon, and P. Lebaron. (2010). Effect of a transient perturbation on marine bacterial communities with contrasting history. J Appl Microbiol 109:751-762.


Antony-Babu S, Stach JEM, Goodfellow M (2010) Computer-assisted numerical analysis of colour-group data for dereplication of streptomycetes for bioprospecting and ecological purposes. Antonie Van Leeuwenhoek 97:231-239

Basset C, Stien D, Espindola SL (2010) Research of antifungal compounds from the Amazonian biomass by a bio-inspired approach. Planta Med 76:1172-1172

Dass SC, Abu-Ghannam N, Antony-Babu S, Cummins EJ (2010) Ecology and molecular typing of L. monocytogenes in a processing plant for cold-smoked salmon in the Republic of Ireland. Food Res Int 43:1529-1536

Fagervold SK, Chai Y, Davis JW, Wilken M, Cornelissen G, Ghosh U (2010) Bioaccumulation of Polychlorinated Dibenzo-p-Dioxins/Dibenzofurans in E. fetida from Floodplain Soils and the Effect of Activated Carbon Amendment. Environ Sci Technol 44:5546-5552

Houel E, Bertani S, Bourdy G, Deharo E, Jullian V, Valentin A, Chevalley S, Stien D (2010) Quassinoid constituents of Quassia amara L. (Simaroubaceae) leaf herbal tea. Impact on its antimalarial activity and cytotoxicity. Planta Med 76:1381-1382

Nirma C, Rodrigues A, Basset C, Stien D, Eparvier V (2010) Isoflavonoids with insecticide and larvicide activities from Muellera frutescens Standl. Planta Med 76:1197-1198

Odonne G, Stien D, Bourdy G (2010) Two piptocarphols from Pseudoelephantopus spicatus (Asteraceae) may explain its traditional use against cutaneous leishmaniasis amongst the Chayahuita (Peruvian Amerindians). Planta Med 76:1381-1381

Rodrigues A, Espindola SL, Beauchene J, Stien D (2010a) Antifungal components from Amazonian long lasting heartwood. Planta Med 76:1172-1172

Rodrigues A, Theodoro P, Basset C, Espindola L, Stien D (2010b) Bio-inspiration in the discovery of active natural products: an example with the search of antifungal agents inspired from long-lasting woods. Planta Med 76:1293-1293

Rodrigues AMS, Theodoro PNET, Eparvier V, Basset C, Silva MRR, Beauchene J, Espindola LS, Stien D (2010c) Search for Antifungal Compounds from the Wood of Durable Tropical Trees. J Nat Prod 73:1706-1707

Royer M, Herbette G, Eparvier V, Beauchene J, Thibaut B, Stien D (2010a) Secondary metabolites of Bagassa guianensis Aubl. wood, a contribution to the understanding of the natural durability and to the chemotaxonomy of the Moraceae family with an unexplored genus. Planta Med 76:1375-1375

Royer M, Herbette G, Eparvier V, Beauchene J, Thibaut B, Stien D (2010b) Secondary metabolites of Bagassa guianensis Aubl. wood: A study of the chemotaxonomy of the Moraceae family. Phytochemistry 71:1708-1713

Royer M, Stien D, Beauchene J, Herbette G, McLean JP, Thibaut A, Thibaut B (2010c) Extractives of the tropical wood wallaba (Eperua falcata Aubl.) as natural anti-swelling agents. Holzforschung 64:211-215

Spitz J, Mourocq E, Schoen V, Ridoux V (2010) Proximate composition and energy content of forage species from the Bay of Biscay: high- or low-quality food? ICES J Mar Sci 67:909-915

personnel formerly in the LBBM or in teams MBB and JRT of the l'USR 7621

Diercks, S., C. Gescher, K. Metfies, and L. K. Medlin. 2010. Evaluation of locked nucleic acids for signal enhancement of oligonucleotide probes for microalgae immobilised on solid surfaces (vol 21, pg 657, 2009). J Appl Phycol 22:813-813.

Metfies, K., C. Gescher, S. Frickenhaus, R. Niestroy, A. Wichels, G. Gerdts, B. Knefelkamp, K. Wiltshire, and L. K. Medlin. 2010. Contribution of the Class Cryptophyceae to phytoplankton structure in the German Bight. J Phycol 26:1152-1160.

Ory, P., H. J. Hartmann, F. Jude, C. Dupuy, Y. Del Amo, P. Catala, F. Mornet, V. Huet, B. Jan, D. Vincent, B. Sautour, and H. Montanie. 2010. Pelagic food web patterns: do they modulate virus and nanoflagellate effects on picoplankton during the phytoplankton spring bloom? Environ Microbiol 12:2755-72.

John, U., S. Beszteri, G. Glöckner, S. Singh, L. K. Medlin, and A. D. Cembella. 2010. Genomic characterisation of the ichthyotoxic prymnesiophyte Chrysochromulina polylepis, and the expression of PKS genes in synchronized cultures. Eur J Phycol 45:215-219.

Medlin LK and Kooistra WHCF 2010 Methods to Estimate the Diversity in the Marine Photosynthetic Protist Community with Illustrations from Case Studies: A Review. Diversity 2:973-1014

Medlin, L., and S. Strieben. 2010. Refining cryptophyte identification: matching cell fixation methods to FISH hybridisation of cryptomonads. J Appl Phycol 22:725-731

Medlin, L. K., S. Dierks, and S. Beszteri. 2010. Mini review: probes for detecting Prymnesium parvum and preliminary results from gene expression studies. J Am Water Resour As 46:144-152.

Medlin, L. K. 2010. Pursuit of a natural classification of diatoms: An incorrect comparison of published data. Eur J Phycol 45:155-166.

Medlin, L. K., and K. Schmidt. 2010. Molecular probes improve the taxonomic resolution of cryptophyte abundance in Arcachon Bay. Vie Milieu 60, 9-15.

Carvalho GR, Creer S, Allen MJ, Costa FO, Tsigenopoulos CS, Le Goff-Vitry M, Magoulas A, Medlin L, Metfies K (2010) Genomics in the Discovery and Monitoring of Marine Biodiversity. In: Cock JM, Tessmar-Raible K, Boyen C, Viard F (eds) Introduction to Marine Genomics, Vol 1. Springer Netherlands, p 1-32

Diercks, S., K. Metfies, and L. K. Medlin. 2010. Electrochemical detection of toxic algae with a biosensor, p. 67-76, IOC Manuals and Guides, no. 50Microscopic and molecular methods for quantitative phytoplankton analysis. Intergovernmental Oceanographic Commission of UNESCO.

Gescher, G., M. K., and L. K. Medlin. 2010. Microarray hybridization for quantification of microalgae p. 77-86, IOC Manuals and Guides, no. 50 Microscopic and molecular methods for quantitative phytoplankton analysis. Intergovernmental Oceanographic Commission of UNESCO.

Tobe, K., D. Tullis, M. Gladstone, D. Anderson, and L. K. Medlin. 2010. Detecting intact algal cells with whole cell hybridisation assays, p. 55-66, IOC Manuals and Guides, no. 50 Microscopic and molecular methods for quantitative phytoplankton analysis. Intergovernmental Oceanographic Commission of UNESCO.

Mol Ecol Resour Primer Development Consortium, Aggarwal, R. K.(...), Medlin, LK (...) (2010) Permanent Genetic Resources added to Mol Ecol Resour Database 1 August 2010 – 30 September 2010. Mol Ecol Resour, 11: 219–222.

Valerie Domien - 17/07/16

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